Shanfeng Zhu

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MetaMHCPan

A Meta Approach for Pan-Specific MHC Peptide Binding Prediction.

Xu Y, Luo C, Mamitsuka H, Zhu S. Methods Mol Bioi(2016):1404:753-60.

DrugE-Rank

Improving drug-target interaction prediction of new candidate drugs or targets by ensemble learning to rank.

Qingjun Yuan, Junning Gao, Dongliang Wu,Shihua Zhang, Hiroshi Mamitsuka, Shanfeng Zhu.Bioinformatics(ISMB 2016)32(12):i18-i27(2016)

BMExpert

BMExpert: Mining MEDLINE for Finding Experts in Biomedical Domains Based on Language Model.

Beichen Wang, Xiaodong Chen, Hiroshi Mamitsuka, and Shanfeng Zhu. IEEE/ACM Trans.Comput.Biology Bioinform. 12(6): 1286-1294(2015)

Panview

A review of pan-specific methods and tools for MHC:peptide binding prediction.

Lianming Zhang, Keiko Udaka, Hiroshi Mamitsuka, Shanfeng Zhu*. Briefings of Bioinformatics 13(3): 350-364 (2012) .

TEPITOPEpan

Based on Position-specific scoring matrix, we develop TEPITOPOEpan for MHC class II peptide binding prediction by extending the original method TEPITOPE.

Lianming Zhang, Yiqing Chen, Hau-San Wong, Shuigeng Zhou, Hiroshi Mamitsuka, Shanfeng Zhu*. PLoS ONE. 7(2):e30483, (2012)

MHC2SKpan

MHC2SKpan: a novel kernel based approach for pan-specific MHC class II peptide binding prediction

Linyuan Guo, Cheng Luo , Shanfeng Zhu*. BMC Genomics 14 Suppl 5, S11，（2013）

MHC2MIL

A novel multiple instance learning based method for MHC-II peptide binding perdiction by considering peptide flanking region and residue postions

Yichang Xu, Cheng Luo, Mingjie Qian, Xiaodi Huang and Shanfeng Zhu. BMC Genomics 2014, 15(Suppl9):S9

MetaMHC

A meta-approach to predict peptides binding to MHC molecules including class I and class II.

Xihao Hu, Wenjian Zhou, Keiko Udaka, Hiroshi Mamitsuka, Shanfeng Zhu*. Nucleic Acids Research 38: W474-479 (2010)