MetaMHCPan
Xu Y, Luo C, Mamitsuka H, Zhu S. Methods Mol Bioi(2016):1404:753-60.
DrugE-Rank
Qingjun Yuan, Junning Gao, Dongliang Wu,Shihua Zhang, Hiroshi Mamitsuka, Shanfeng Zhu.Bioinformatics(ISMB 2016)32(12):i18-i27(2016)
BMExpert
Beichen Wang, Xiaodong Chen, Hiroshi Mamitsuka, and Shanfeng Zhu. IEEE/ACM Trans.Comput.Biology Bioinform. 12(6): 1286-1294(2015)
Panview
Lianming Zhang, Keiko Udaka, Hiroshi Mamitsuka, Shanfeng Zhu*. Briefings of Bioinformatics 13(3): 350-364 (2012) .
TEPITOPEpan
Lianming Zhang, Yiqing Chen, Hau-San Wong, Shuigeng Zhou, Hiroshi Mamitsuka, Shanfeng Zhu*. PLoS ONE. 7(2):e30483, (2012)
MHC2SKpan
Linyuan Guo, Cheng Luo , Shanfeng Zhu*. BMC Genomics 14 Suppl 5, S11，（2013）
MHC2MIL
Yichang Xu, Cheng Luo, Mingjie Qian, Xiaodi Huang and Shanfeng Zhu. BMC Genomics 2014, 15(Suppl9):S9
MetaMHC
Xihao Hu, Wenjian Zhou, Keiko Udaka, Hiroshi Mamitsuka, Shanfeng Zhu*. Nucleic Acids Research 38: W474-479 (2010)